SAMTOOLS_PATH=\
    `echo 'cat(Rsamtools:::.pkgLd())' | "${R_HOME}/bin/R" --vanilla --slave`
SAMTOOLS_LIBS="$(SAMTOOLS_PATH)/libbam.a" "$(SAMTOOLS_PATH)/libbcf.a"\
    "$(SAMTOOLS_PATH)/libtabix.a" -lz -pthread
SAMTOOLS_CPPFLAGS=-D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 \
    -D_LARGEFILE64_SOURCE

PKG_LIBS=$(SAMTOOLS_LIBS)
PKG_CPPFLAGS=$(SAMTOOLS_CPPFLAGS)
