RUNIT TEST PROTOCOL -- Tue Dec  6 13:20:55 2011 
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Number of test functions: 18 
Number of errors: 0 
Number of failures: 2 

 
1 Test Suite : 
GenABEL unit testing - 18 test functions, 0 errors, 2 failures
FAILURE in test.exports: Error in checkIdentical(xBack[, sameCode], dta[, sameCode]) : FALSE 
FAILURE in test.polylik: Error in checkEquals(h2htNew$pgresidualY, h2htOld$pgresidualY) : 
  Mean relative difference: 1.756053e-08



Details 
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Test Suite: GenABEL unit testing 
Test function regexp: ^test.+ 
Test file regexp: ^runit.+\.[rR]$ 
Involved directory: 
/home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests 
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.convert.snp.ped.R 
test.convert.snp.ped: (0 checks) ... OK (0.12 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.convert.snp.R 
test.convert.snp: (4 checks) ... OK (1.49 seconds)
--------------------------- 
Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.descriptives.trait.R 
test.descriptives.trait: (1 checks) ... OK (0.43 seconds)
--------------------------- 
Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.exports.R 
test.exports: FAILURE !! (check number 8)
Error in checkIdentical(xBack[, sameCode], dta[, sameCode]) : FALSE 
--------------------------- 
Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.findRelatives.R 
test.findRelatives: (10 checks) ... OK (45.05 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.impute2xxx_large.R 
test.impute2xxx_large: (0 checks) ... OK (0.03 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.impute2xxx.R 
test.impute2databel: (23 checks) ... OK (1.15 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.iterator.R 
test.qtscore: (0 checks) ... OK (0 seconds)
test.summary_snp_data: (3 checks) ... OK (8.34 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.mach2databel.R 
test.mach2databel: (8 checks) ... OK (0.97 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.merge.R 
test.merge.bug1641: (0 checks) ... OK (0.17 seconds)
test.merge.bug1676: (2 checks) ... OK (0.2 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.mmscore.R 
test.exports: (1 checks) ... OK (0.65 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.polygenic.R 
test.polygenic.Bug1322: (2 checks) ... OK (1.05 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.polylik.R 
test.polylik: FAILURE !! (check number 4)
Error in checkEquals(h2htNew$pgresidualY, h2htOld$pgresidualY) : 
  Mean relative difference: 1.756053e-08
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.recodeChromosome.R 
test.recodeChromosome: (8 checks) ... OK (0.19 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.sortmap.internal.R 
test.sortmap.internal.bug1673: (1 checks) ... OK (0 seconds)
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Test file: /home/yurii/yuriiaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.strandModify.R 
test.strandModify: (2 checks) ... OK (0.05 seconds)
