ProteoWizard
Class Index
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z
a
DemuxDebugRWTest
MemoryIndex
(
pwiz::data
)
ProteinList_FilterPredicate_IdSet
(
pwiz::analysis
)
SpectrumIterator
(
pwiz::msdata
)
DemuxDebugWriter
(
pwiz::analysis
)
MemoryMRUCache
(
pwiz::msdata
)
ProteinList_FilterPredicate_IndexSet
(
pwiz::analysis
)
SpectrumList
(
pwiz::msdata
)
Activation
(
pwiz::msdata
)
DemuxHelpersTest
MetadataReporter
(
pwiz::analysis
)
ProteinListCache
(
pwiz::proteome
)
SpectrumList_3D
(
pwiz::analysis
)
AdaptedErrorDerivative
(
pwiz::frequency::DerivativeTest
)
DemuxSolver
(
pwiz::analysis
)
Mexican_Hat
(
ralab::base::filter::utilities
)
ProteinListFactory
(
pwiz::analysis
)
SpectrumList_ABI
(
pwiz::msdata::detail
)
AdaptedErrorFunction
(
pwiz::frequency::DerivativeTest
)
DemuxSolverTest
Mexican_Hat2
(
ralab::base::filter::utilities
)
ProteinListSimple
(
pwiz::proteome
)
SpectrumList_ABI_T2D
(
pwiz::msdata::detail
)
AlternativeProtein
(
pwiz::data::pepxml
)
DemuxTest
MixtureModel
(
pwiz::data::pepxml
)
ProteinListWrapper
(
pwiz::proteome
)
SpectrumList_Agilent
(
pwiz::msdata::detail
)
AmbiguousResidue
(
pwiz::identdata
)
DemuxWindow
(
pwiz::analysis
)
ModAminoAcidMass
(
pwiz::data::pepxml
)
ProteomeData
(
pwiz::proteome
)
SpectrumList_Bruker
(
pwiz::msdata::detail
)
AminoAcidModification
(
pwiz::data::pepxml
)
Diff
(
pwiz::data
)
Modification
(
pwiz::proteome
)
ProteomeDataFile
(
pwiz::proteome
)
SpectrumList_BTDX
(
pwiz::msdata
)
AnalysisCollection
(
pwiz::identdata
)
DiffConfig
(
pwiz::msdata
)
Modification
(
pwiz::tradata
)
Provider
(
pwiz::identdata
)
SpectrumList_ChargeFromIsotope
(
pwiz::analysis
)
AnalysisData
(
pwiz::identdata
)
DiffConfig
(
pwiz::proteome
)
Modification
(
pwiz::identdata
)
Publication
(
pwiz::tradata
)
SpectrumList_ChargeStateCalculator
(
pwiz::analysis
)
AnalysisProtocolCollection
(
pwiz::identdata
)
DiffConfig
(
pwiz::tradata
)
ModificationInfo
(
pwiz::data::pepxml
)
q
SpectrumList_Demux
(
pwiz::analysis
)
AnalysisResult
(
pwiz::data::pepxml
)
DiffConfig
(
pwiz::identdata
)
ModificationList
(
pwiz::proteome
)
SpectrumList_Filter
(
pwiz::analysis
)
AnalysisSampleCollection
(
pwiz::identdata
)
DigestedPeptide
(
pwiz::proteome
)
ModificationMap
(
pwiz::proteome
)
Q3RatioResult
(
pwiz::data::pepxml
)
SpectrumList_FilterPredicate_ActivationType
(
pwiz::analysis
)
AnalysisSoftware
(
pwiz::identdata
)
DigestedPeptideLessThan
mru_list
(
pwiz::util
)
r
SpectrumList_FilterPredicate_AnalyzerType
(
pwiz::analysis
)
AnalysisSummary
(
pwiz::data::pepxml
)
Digestion
(
pwiz::proteome
)
MS2Deisotoper
(
pwiz::analysis
)
SpectrumList_FilterPredicate_ChargeStateSet
(
pwiz::analysis
)
AnalysisTimestamp
(
pwiz::data::pepxml
)
DistributionPoint
(
pwiz::data::pepxml
)
MS2NoiseFilter
(
pwiz::analysis
)
random_access_compressed_ifstream
(
pwiz::util
)
SpectrumList_FilterPredicate_DefaultArrayLengthSet
(
pwiz::analysis
)
analyzer_strings
(
pwiz::analysis
)
KernelTraits::Dummy
(
pwiz::math::MatchedFilter
)
MSData
(
pwiz::msdata
)
RawMassDatum
SpectrumList_FilterPredicate_IndexSet
(
pwiz::analysis
)
analyzer_strings< MetadataReporter >
(
pwiz::analysis
)
e
MSDataAnalyzer
(
pwiz::analysis
)
Reader
(
pwiz::msdata
)
SpectrumList_FilterPredicate_MSLevelSet
(
pwiz::analysis
)
analyzer_strings< RegionSIC >
(
pwiz::analysis
)
MSDataAnalyzerContainer
(
pwiz::analysis
)
Reader
(
pwiz::proteome
)
SpectrumList_FilterPredicate_MzPresent
(
pwiz::analysis
)
analyzer_strings< RegionSlice >
(
pwiz::analysis
)
Element
(
pwiz::chemistry::detail
)
MSDataAnalyzerDriver
(
pwiz::analysis
)
Reader
(
pwiz::tradata
)
SpectrumList_FilterPredicate_Polarity
(
pwiz::analysis
)
analyzer_strings< RegionTIC >
(
pwiz::analysis
)
Index::Entry
(
pwiz::data
)
MSDataCache
(
pwiz::analysis
)
Reader
(
pwiz::identdata
)
SpectrumList_FilterPredicate_PrecursorMzSet
(
pwiz::analysis
)
analyzer_strings< RunSummary >
(
pwiz::analysis
)
EnumConstantNotPresentException
MSDataFile
(
pwiz::msdata
)
Reader1
SpectrumList_FilterPredicate_ScanEventSet
(
pwiz::analysis
)
analyzer_strings< SpectrumBinaryData >
(
pwiz::analysis
)
EnzymaticSearchConstraint
(
pwiz::data::pepxml
)
MSDataMerger
(
pwiz::msdata
)
Reader2
SpectrumList_FilterPredicate_ScanNumberSet
(
pwiz::analysis
)
analyzer_strings< SpectrumTable >
(
pwiz::analysis
)
Enzyme
(
pwiz::identdata
)
MSDataWithSettableVersion
Reader_ABI
(
pwiz::msdata
)
SpectrumList_FilterPredicate_ScanTimeRange
(
pwiz::analysis
)
AnotherRootHandler
EnzymePtr_missedCleavages
DemuxTest::MSDPair
Reader_ABI_T2D
(
pwiz::msdata
)
SpectrumList_FilterPredicate_ThermoScanFilter
(
pwiz::analysis
)
Handler::Attributes::attribute
(
pwiz::minimxml::SAXParser
)
EnzymePtr_specificity
MSIHandler
(
pwiz::util
)
Reader_Agilent
(
pwiz::msdata
)
SpectrumList_IonMobility
(
pwiz::analysis
)
Handler::Attributes
(
pwiz::minimxml::SAXParser
)
Enzymes
(
pwiz::identdata
)
MSInspectRecordBuilder
(
pwiz::peptideid
)
Reader_Bruker
(
pwiz::msdata
)
SpectrumList_LockmassRefiner
(
pwiz::analysis
)
XMLWriter::Attributes
(
pwiz::minimxml
)
ParametrizedFunction::ErrorFunction
(
pwiz::frequency
)
MSLevelSorter
Reader_BTDX
(
pwiz::msdata
)
SpectrumList_MetadataFixer
(
pwiz::analysis
)
b
ErrorPoint
(
pwiz::data::pepxml
)
MSMSPipelineAnalysis
(
pwiz::data::pepxml
)
Reader_FASTA
(
pwiz::proteome
)
SpectrumList_MGF
(
pwiz::msdata
)
EvenMS2Predicate
MSMSRunSummary
(
pwiz::data::pepxml
)
Reader_MGF
(
pwiz::msdata
)
SpectrumList_MSn
(
pwiz::msdata
)
BadListener
EvenPredicate
MSnHeader
(
pwiz::msdata
)
Reader_MSn
(
pwiz::msdata
)
SpectrumList_mzML
(
pwiz::msdata
)
BaseDiffConfig
(
pwiz::data
)
EvenRequester
MSXDemultiplexer
(
pwiz::analysis
)
Reader_mz5
(
pwiz::msdata
)
SpectrumList_MZRefiner
(
pwiz::analysis
)
basic_charcounter
(
pwiz::minimxml
)
Evidence
(
pwiz::tradata
)
MyBase
Reader_mzML
(
pwiz::msdata
)
SpectrumList_MZWindow
(
pwiz::analysis
)
BibliographicReference
(
pwiz::identdata
)
ExtendedReaderList
(
pwiz::msdata
)
MyPred
Reader_mzXML
(
pwiz::msdata
)
SpectrumList_mzXML
(
pwiz::msdata
)
Bin1D
(
ralab::base::resample
)
ExtraZeroSamplesFilter
(
pwiz::analysis
)
MyWrapper
Reader_Shimadzu
(
pwiz::msdata
)
SpectrumList_PeakFilter
(
pwiz::analysis
)
BinaryDataArray
(
pwiz::msdata
)
f
MZIntensityPair
(
pwiz::msdata
)
Reader_Thermo
(
pwiz::msdata
)
SpectrumList_PeakPicker
(
pwiz::analysis
)
BinaryDataEncoder
(
pwiz::msdata
)
mzrtEqual
Reader_UIMF
(
pwiz::msdata
)
SpectrumList_PrecursorRecalculator
(
pwiz::analysis
)
BinaryIndexStream
(
pwiz::data
)
Feature
(
pwiz::data::peakdata
)
MZRTField
(
pwiz::analysis
)
Reader_Waters
(
pwiz::msdata
)
SpectrumList_PrecursorRefine
(
pwiz::analysis
)
Bucket1D
(
ralab::base::resample
)
FeatureDetector
(
pwiz::analysis
)
MZTolerance
(
pwiz::chemistry
)
Reader1::ReaderConfig
SpectrumList_ScanSummer
(
pwiz::analysis
)
c
FeatureDetectorPeakel
(
pwiz::analysis
)
n
Reader2::ReaderConfig
SpectrumList_Smoother
(
pwiz::analysis
)
FeatureDetectorSimple
(
pwiz::analysis
)
ReaderFail
(
pwiz::msdata
)
SpectrumList_Sorter
(
pwiz::analysis
)
SpectrumListCache::CacheEntry
(
pwiz::msdata
)
FeatureFile
(
pwiz::data::peakdata
)
nativeID_less
(
pwiz::peptideid
)
ReaderFail
(
pwiz::proteome
)
SpectrumList_SorterPredicate_ScanStartTime
(
pwiz::analysis
)
CalibrationParameters
(
pwiz::data
)
FeatureModeler
(
pwiz::analysis
)
NestedHandler
ReaderFail
(
pwiz::tradata
)
SpectrumList_Thermo
(
pwiz::msdata::detail
)
CancelListener
FeatureModeler_Gaussian
(
pwiz::analysis
)
NNLSSolver
(
pwiz::analysis
)
ReaderFail
(
pwiz::identdata
)
SpectrumList_TitleMaker
(
pwiz::analysis
)
CancelProgressCallback
Fifth
PeakFamilyDetectorFT::NoDataException
(
pwiz::analysis
)
ReaderList
(
pwiz::proteome
)
SpectrumList_UIMF
(
pwiz::msdata::detail
)
basic_charcounter::category
(
pwiz::minimxml
)
FifthHandler
Noise
(
pwiz::analysis
)
ReaderList
(
pwiz::tradata
)
SpectrumList_Waters
(
pwiz::msdata::detail
)
CharIndexedVector
(
pwiz::util
)
FileContent
(
pwiz::msdata
)
NoiseCalculator
(
pwiz::analysis
)
ReaderList
(
pwiz::identdata
)
SpectrumList_ZeroSamplesFilter
(
pwiz::analysis
)
CharIndexedVectorConstIterator
(
pwiz::util
)
FileDescription
(
pwiz::msdata
)
NoiseCalculator_2Pass
(
pwiz::analysis
)
ReaderList
(
pwiz::msdata
)
SpectrumListBase
(
pwiz::msdata
)
CharIndexedVectorIterator
(
pwiz::util
)
Filter
(
pwiz::identdata
)
NoVendorPeakPickingException
(
pwiz::analysis
)
MSIHandler::Record
(
pwiz::util
)
SpectrumListCache
(
pwiz::msdata
)
Chromatogram
(
pwiz::msdata
)
FilterWrapper
NthPower
(
ralab::base::stats
)
PeptideID::Record
(
pwiz::peptideid
)
SpectrumListFactory
(
pwiz::analysis
)
ChromatogramDataFilter
(
pwiz::analysis
)
First
o
Record
(
pwiz::proteome::AminoAcid::Info
)
SpectrumListSimple
(
pwiz::msdata
)
ChromatogramIdentity
(
pwiz::msdata
)
FirstHandler
Record
(
pwiz::chemistry::Element::Info
)
SpectrumListWrapper
(
pwiz::msdata
)
ChromatogramList
(
pwiz::msdata
)
FlatRecordBuilder
(
pwiz::peptideid
)
OBO
(
pwiz::data
)
IPIFASTADatabase::Record
(
pwiz::proteome
)
SpectrumPeakExtractor
(
pwiz::analysis
)
ChromatogramList_ABI
(
pwiz::msdata::detail
)
Formula
(
pwiz::chemistry
)
once_flag_proxy
(
pwiz::util
)
PepxmlRecordReader::record
(
pwiz::analysis
)
SpectrumPeakExtractorTest
ChromatogramList_Agilent
(
pwiz::msdata::detail
)
FragmentArray
(
pwiz::identdata
)
OneMinusAbs
RegexCVMap
(
pwiz::identdata
)
SpectrumQuery
(
pwiz::data::pepxml
)
ChromatogramList_Bruker
(
pwiz::msdata::detail
)
Fragmentation
(
pwiz::proteome
)
OrderedPair
(
pwiz::math
)
RegionAnalyzer
(
pwiz::analysis
)
RegionAnalyzer::SpectrumStats
(
pwiz::analysis
)
ChromatogramList_mzML
(
pwiz::msdata
)
FrequencyData
(
pwiz::data
)
OrderedPairContainerRef
(
pwiz::math
)
RegionSIC
(
pwiz::analysis
)
SpectrumTable
(
pwiz::analysis
)
ChromatogramList_Shimadzu
(
pwiz::msdata::detail
)
FrequencyEstimator
(
pwiz::frequency
)
Organization
(
pwiz::identdata
)
RegionSlice
(
pwiz::analysis
)
SpectrumWorkerThreads
(
pwiz::msdata
)
ChromatogramList_Thermo
(
pwiz::msdata::detail
)
FrequencyEstimatorPhysicalModel
(
pwiz::frequency
)
organization_p
(
pwiz::identdata
)
RegionTIC
(
pwiz::analysis
)
SquareRoot
(
ralab::base::resample
)
ChromatogramList_Waters
(
pwiz::msdata::detail
)
FrequencyEstimatorSimple
(
pwiz::frequency
)
XMLWriter::OutputObserver
(
pwiz::minimxml
)
Residue
(
pwiz::identdata
)
Stats
(
pwiz::math
)
ChromatogramListBase
(
pwiz::msdata
)
FTMSCompFunctor
(
ralab::base::resample
)
OverlapDemultiplexer
(
pwiz::analysis
)
RetentionTime
(
pwiz::tradata
)
RegionAnalyzer::Stats
(
pwiz::analysis
)
ChromatogramListSimple
(
pwiz::msdata
)
FTSieve
p
ridgeLine
Handler::Status
(
pwiz::minimxml::SAXParser
)
ClickwrapPrompter
(
pwiz::util
)
g
RocDataPoint
(
pwiz::data::pepxml
)
StringMatchCVMap
(
pwiz::identdata
)
Image::Color
(
pwiz::util
)
pairData
Root
SubstitutionModification
(
pwiz::identdata
)
Component
(
pwiz::msdata
)
Gauss
(
ralab::base::filter::utilities
)
Parabola
(
pwiz::math
)
RootHandler
t
ComponentList
(
pwiz::msdata
)
Gauss_1deriv
(
ralab::base::filter::utilities
)
ParamContainer
(
pwiz::data
)
rtimeMap
Compound
(
pwiz::tradata
)
Goober
Software::Parameter
(
pwiz::data::peakdata
)
RTMatches_Any
(
pwiz::analysis
)
TabHandler
(
pwiz::util
)
NoiseCalculator_2Pass::Config
(
pwiz::analysis
)
h
Parameter
(
pwiz::data::pepxml
)
RTMatches_Contains
(
pwiz::analysis
)
TabReader
(
pwiz::util
)
PeakelGrower_Proximity::Config
(
pwiz::analysis
)
ParameterEstimator
(
pwiz::frequency
)
RTMatches_IsContainedIn
(
pwiz::analysis
)
TabularConfig
(
pwiz::analysis
)
BinaryDataEncoder::Config
(
pwiz::msdata
)
Handler
(
pwiz::minimxml::SAXParser
)
ParametrizedCosine
Run
(
pwiz::msdata
)
Target
(
pwiz::tradata
)
PeakelPicker_Basic::Config
(
pwiz::analysis
)
HandlerFeature
(
pwiz::data::peakdata
)
ParametrizedDerivativeSlice
(
pwiz::frequency::DerivativeTest
)
RunSummary
(
pwiz::analysis
)
Target
(
pwiz::msdata
)
PeakFamilyDetectorFT::Config
(
pwiz::analysis
)
HandlerPeak
(
pwiz::data::peakdata
)
ParametrizedFunction
(
pwiz::frequency
)
s
TargetList
(
pwiz::tradata
)
PeakFinder_SNR::Config
(
pwiz::analysis
)
HandlerPeakel
(
pwiz::data::peakdata
)
ParametrizedFunctionSlice
(
pwiz::frequency::DerivativeTest
)
Term
(
pwiz::data
)
PeakFitter_Parabola::Config
(
pwiz::analysis
)
HasBinaryDataPredicate
ParamGroup
(
pwiz::data
)
Same
(
pwiz::data::diff_impl
)
TestAminoAcid
MS2Deisotoper::Config
(
pwiz::analysis
)
HasID
(
pwiz::data::diff_impl
)
SpectrumList_Demux::Params
(
pwiz::analysis
)
SameDeep
(
pwiz::data::diff_impl
)
TestChargeStateCalculator
Reader::Config
(
pwiz::msdata
)
HermiteInterpolate
(
ralab::base::base::utilities
)
MSXDemultiplexer::Params
(
pwiz::analysis
)
Sample
(
pwiz::msdata
)
TestData
Serializer_mzML::Config
(
pwiz::msdata
)
i
OverlapDemultiplexer::Params
(
pwiz::analysis
)
Sample
(
pwiz::identdata
)
TestDatum
Serializer_mzXML::Config
(
pwiz::msdata
)
parentIon
SampleDatum
(
pwiz::data
)
TestDeisotopeCalculator
PrecursorMassFilter::Config
(
pwiz::analysis
)
id_p
(
pwiz::identdata
)
Peak
(
pwiz::data::peakdata
)
SampledData
(
pwiz::math::MatchedFilter
)
TestDeisotoper
SpectrumIterator::Config
(
pwiz::msdata
)
IDemultiplexer
(
pwiz::analysis
)
Peak
(
pwiz::analysis
)
SampleEnzyme
(
pwiz::data::pepxml
)
TestETDMassFilter
MS2NoiseFilter::Config
(
pwiz::analysis
)
IdentData
(
pwiz::identdata
)
PeakData
(
pwiz::data::peakdata
)
SamplingWith
(
ralab::base::resample
)
TestFormula
PrecursorRecalculatorDefault::Config
(
pwiz::analysis
)
IdentDataFile
(
pwiz::identdata
)
PeakDetector
(
pwiz::analysis
)
SavitzkyGolaySmoother
(
pwiz::analysis
)
TestFragmentation
Digestion::Config
(
pwiz::proteome
)
Identifiable
(
pwiz::identdata
)
PeakDetector
(
pwiz::frequency
)
saxstring
(
pwiz::minimxml::SAXParser
)
TestInfo
Reader_FASTA::Config
(
pwiz::proteome
)
IdentifiableParamContainer
(
pwiz::identdata
)
PeakDetectorMatchedFilter
(
pwiz::frequency
)
Scan
(
pwiz::data::peakdata
)
TestIterationListener
Serializer_FASTA::Config
(
pwiz::proteome
)
IInterpolation
PeakDetectorNaive
(
pwiz::frequency
)
Scan
(
pwiz::msdata
)
TestIterationListener_WithCancel
FrequencyEstimatorPhysicalModel::Config
(
pwiz::frequency
)
Image
(
pwiz::util
)
Peakel
(
pwiz::data::peakdata
)
ScanList
(
pwiz::msdata
)
TestListener
IsotopeEnvelopeEstimator::Config
(
pwiz::chemistry
)
Index
(
pwiz::data
)
PeakelGrower
(
pwiz::analysis
)
ScanSettings
(
pwiz::msdata
)
TestMetadataFixer
XMLWriter::Config
(
pwiz::minimxml
)
Index_mzML
(
pwiz::msdata
)
PeakelGrower_Proximity
(
pwiz::analysis
)
ScanWindow
(
pwiz::msdata
)
TestModification
PeakDetectorMatchedFilter::Config
(
pwiz::frequency
)
SpectrumList_mzXML::index_not_found
(
pwiz::msdata
)
PeakelPicker
(
pwiz::analysis
)
PeakDetectorMatchedFilter::Score
(
pwiz::frequency
)
TestModifiedPeptide
MSDataCache::Config
(
pwiz::analysis
)
IndexList
(
pwiz::msdata
)
PeakelPicker_Basic
(
pwiz::analysis
)
scoreChain
TestMS2Denoise
PepxmlRecordReader::Config
(
pwiz::analysis
)
IndexList
(
pwiz::proteome
)
PeakExtractor
(
pwiz::analysis
)
SearchDatabase
(
pwiz::data::pepxml
)
TestOperator
RegionAnalyzer::Config
(
pwiz::analysis
)
Inputs
(
pwiz::identdata
)
PeakFamily
(
pwiz::data::peakdata
)
SearchDatabase
(
pwiz::identdata
)
TestOutputObserver
RegionSIC::Config
(
pwiz::analysis
)
Instrument
(
pwiz::tradata
)
PeakFamilyDetector
(
pwiz::analysis
)
SearchHit
(
pwiz::data::pepxml
)
TestPair
RegionSlice::Config
(
pwiz::analysis
)
InstrumentConfiguration
(
pwiz::msdata
)
PeakFamilyDetectorFT
(
pwiz::analysis
)
SearchModification
(
pwiz::identdata
)
TestPathmask
RegionTIC::Config
(
pwiz::analysis
)
IntegerSet
(
pwiz::util
)
PeakFinder
(
pwiz::analysis
)
SearchResult
(
pwiz::data::pepxml
)
TestPathPredicate
(
pwiz::util
)
RunSummary::Config
(
pwiz::analysis
)
Interpretation
(
pwiz::tradata
)
PeakFinder_SNR
(
pwiz::analysis
)
SearchScore
(
pwiz::data::pepxml
)
TestPeptide
Reader::Config
(
pwiz::identdata
)
IntegerSet::Interval
(
pwiz::util
)
PeakFitter
(
pwiz::analysis
)
SearchSummary
(
pwiz::data::pepxml
)
TestReader
SpectrumBinaryData::Config
(
pwiz::analysis
)
IonType
(
pwiz::identdata
)
PeakFitter_Parabola
(
pwiz::analysis
)
Second
TestScanSummerCalculator
Reader1::Config
IPIFASTADatabase
(
pwiz::proteome
)
PeakPicker
(
ralab::base::ms
)
SecondHandler
TestSpectrumInfo
Reader2::Config
IPrecursorMaskCodec
(
pwiz::analysis
)
Pep2MzIdent
(
pwiz::identdata
)
SelectedIndexPredicate
TestThresholder
Serializer_mzIdentML::Config
(
pwiz::identdata
)
Is_T2D_Directory
Peptide
(
pwiz::proteome
)
SelectedIon
(
pwiz::msdata
)
TextWriter
(
pwiz::msdata
)
Serializer_pepXML::Config
(
pwiz::identdata
)
IsDirectory
Peptide
(
pwiz::tradata
)
seq_p
(
pwiz::identdata
)
TextWriter
(
pwiz::tradata
)
SpectrumTable::Config
(
pwiz::analysis
)
isoChain
Peptide
(
pwiz::identdata
)
SeqMinus
(
ralab::base::base::utilities
)
TextWriter
(
pwiz::identdata
)
Serializer_protXML::Config
(
pwiz::identdata
)
IsolationWindow
(
pwiz::msdata
)
PeptideEvidence
(
pwiz::identdata
)
SeqPlus
(
ralab::base::base::utilities
)
TextWriter
(
pwiz::proteome
)
Serializer_Text::Config
(
pwiz::identdata
)
IsolationWindow
(
pwiz::analysis
)
PeptideHypothesis
(
pwiz::identdata
)
sequence_p
(
pwiz::identdata
)
ThreadStatus
FeatureDetectorPeakel::Config
(
pwiz::analysis
)
Isotope
(
pwiz::chemistry::detail
)
PeptideID
(
pwiz::peptideid
)
SequenceCollection
(
pwiz::identdata
)
ThresholdFilter
(
pwiz::analysis
)
Configuration
(
pwiz::tradata
)
IsotopeCalculator
(
pwiz::chemistry
)
PeptideID_flat
(
pwiz::peptideid
)
Serializer_FASTA
(
pwiz::proteome
)
TimeIntensityPair
(
pwiz::msdata
)
Digestion::const_iterator
(
pwiz::proteome
)
isotopeChain
PeptideID_pepXml
(
pwiz::peptideid
)
Serializer_MGF
(
pwiz::msdata
)
Timer
(
pwiz::util
)
Contact
(
pwiz::msdata
)
IsotopeEnvelopeEstimator
(
pwiz::chemistry
)
PeptideIDMap
(
pwiz::peptideid
)
Serializer_MSn
(
pwiz::msdata
)
TraData
(
pwiz::tradata
)
Contact
(
pwiz::tradata
)
IsotopeTable
(
pwiz::chemistry
)
PeptideProphetResult
(
pwiz::data::pepxml
)
Serializer_mzIdentML
(
pwiz::identdata
)
TraDataFile
(
pwiz::tradata
)
Contact
(
pwiz::identdata
)
IsoWindowHasher
(
pwiz::analysis
)
PeptideProphetSummary
(
pwiz::data::pepxml
)
Serializer_mzML
(
pwiz::msdata
)
Transition
(
pwiz::tradata
)
ContactRole
(
pwiz::identdata
)
IsRawData
PepxmlRecordReader
(
pwiz::analysis
)
Serializer_mzXML
(
pwiz::msdata
)
TranslationTable
(
pwiz::identdata
)
Convert2Dense
(
ralab::base::resample
)
IsRawFile
PepXMLSpecificity
(
pwiz::identdata
)
Serializer_pepXML
(
pwiz::identdata
)
TruncatedLorentzian
(
pwiz::frequency
)
Correlation
(
pwiz::math::MatchedFilter
)
IsWiffFile
Person
(
pwiz::identdata
)
Serializer_protXML
(
pwiz::identdata
)
TruncatedLorentzianEstimator
(
pwiz::frequency
)
CosineInterpolate
(
ralab::base::base::utilities
)
IterationListener
(
pwiz::util
)
person_p
(
pwiz::identdata
)
Serializer_Text
(
pwiz::identdata
)
TruncatedLorentzianParameters
(
pwiz::frequency
)
CSHA1
IterationListenerRegistry
(
pwiz::util
)
Image::Point
(
pwiz::util
)
Serializer_traML
(
pwiz::tradata
)
u
CubicHermiteSpline
(
pwiz::analysis
)
PeptideID::Iterator
(
pwiz::peptideid
)
PPMCompFunctor
(
ralab::base::resample
)
SetRetentionTime
CubicHermiteSplineTest
IntegerSet::Iterator
(
pwiz::util
)
Precursor
(
pwiz::msdata
)
SHA1_ostream
(
pwiz::util
)
IterationListener::UpdateMessage
(
pwiz::util
)
CubicInterpolate
(
ralab::base::base::utilities
)
PeptideID::IteratorInternal
(
pwiz::peptideid
)
Precursor
(
pwiz::tradata
)
SHA1_WORKSPACE_BLOCK
usage_exception
(
pwiz::util
)
CustomPair
k
precursorGroup
SHA1Calculator
(
pwiz::util
)
user_error
(
pwiz::util
)
CV
(
pwiz::cv
)
SpectrumInfo::PrecursorInfo
(
pwiz::msdata
)
SHA1Filter
(
pwiz::util
)
UserParam
(
pwiz::data
)
CVIDMatchCVMap
(
pwiz::identdata
)
KernelTraits
(
pwiz::math::MatchedFilter
)
PrecursorRecalculator::PrecursorInfo
(
pwiz::analysis
)
SHA1OutputObserver
(
pwiz::msdata
)
UserParamNameIs
CVMap
(
pwiz::identdata
)
KernelTraitsBase
(
pwiz::math::MatchedFilter
)
SpectrumList_PrecursorRefine::PrecursorInfo
(
pwiz::analysis
)
SHA1SymmetricFilter
(
pwiz::util
)
v
CVParam
(
pwiz::data
)
KernelTraitsBase< Y(*)(X)>
(
pwiz::math::MatchedFilter
)
PrecursorMaskCodec
(
pwiz::analysis
)
shared_map
(
pwiz::util
)
CVParamIs
(
pwiz::data
)
l
PrecursorMassFilter
(
pwiz::analysis
)
SpectrumIterator::Sieve
(
pwiz::msdata
)
Validation
(
pwiz::tradata
)
CVParamIsChildOf
(
pwiz::data
)
PrecursorRecalculator
(
pwiz::analysis
)
Simple
VectorFunction
(
pwiz::frequency::DerivativeTest
)
CVTermInfo
(
pwiz::cv
)
LegacyAdapter_Instrument
(
pwiz::msdata
)
PrecursorRecalculatorDefault
(
pwiz::analysis
)
SimpleAnalyzer
VectorTabHandler
(
pwiz::util
)
CVTranslator
(
pwiz::data
)
LegacyAdapter_Software
(
pwiz::msdata
)
ProteinList_DecoyGenerator::Predicate
(
pwiz::analysis
)
SimplePeakArea
(
ralab::base::ms
)
Version
(
pwiz::tradata
)
CwtPeakDetector
(
pwiz::analysis
)
LinearInterpolate
(
ralab::base::base::utilities
)
ProteinList_Filter::Predicate
(
pwiz::analysis
)
SimplePicker
(
ralab::base::ms
)
Version
(
pwiz
)
d
LinearLeastSquares
(
pwiz::math
)
SpectrumList_Filter::Predicate
(
pwiz::analysis
)
SimpleProgressCallback
Version
(
pwiz::identdata
)
LinearLeastSquares< LinearLeastSquaresType_LU >
(
pwiz::math
)
SpectrumList_Sorter::Predicate
(
pwiz::analysis
)
Smoother
(
pwiz::analysis
)
Version
(
pwiz::msdata
)
DaCompFunctor
(
ralab::base::resample
)
LinearLeastSquares< LinearLeastSquaresType_QR >
(
pwiz::math
)
Prediction
(
pwiz::tradata
)
Software
(
pwiz::data::peakdata
)
Version
(
pwiz::proteome
)
DatabaseTranslation
(
pwiz::identdata
)
LinearSolver
(
pwiz::math
)
PrintAttribute
Software
(
pwiz::msdata
)
Version
(
pwiz::analysis
)
DataCollection
(
pwiz::identdata
)
LinearSolver< LinearSolverType_LU >
(
pwiz::math
)
PrintEventHandler
Software
(
pwiz::tradata
)
virtual_map
(
pwiz::util
)
DataFilter
(
pwiz::data::pepxml
)
LinearSolver< LinearSolverType_QR >
(
pwiz::math
)
ProcessingMethod
(
pwiz::msdata
)
software_p
(
pwiz::identdata
)
w
MSDataAnalyzer::DataInfo
(
pwiz::analysis
)
LocalMaximumPeakDetector
(
pwiz::analysis
)
Product
(
pwiz::msdata
)
SourceFile
(
pwiz::identdata
)
DataProcessing
(
pwiz::msdata
)
LocalMinPeakArea
(
ralab::base::ms
)
Product
(
pwiz::tradata
)
SourceFile
(
pwiz::msdata
)
WhittakerSmoother
(
pwiz::analysis
)
DatasetDerivation
(
pwiz::data::pepxml
)
PeptideID::Location
(
pwiz::peptideid
)
ProductSpace
(
pwiz::math::MatchedFilter
)
Specificity
(
pwiz::data::pepxml
)
MSDataFile::WriteConfig
(
pwiz::msdata
)
Datum
location_less
(
pwiz::peptideid
)
MSDataAnalyzerDriver::ProgressCallback
(
pwiz::analysis
)
SpectraData
(
pwiz::identdata
)
ProteomeDataFile::WriteConfig
(
pwiz::proteome
)
DBSequence
(
pwiz::identdata
)
m
Protein
(
pwiz::proteome
)
Spectrum
(
pwiz::msdata
)
TraDataFile::WriteConfig
(
pwiz::tradata
)
dbsequence_p
(
pwiz::identdata
)
Protein
(
pwiz::tradata
)
SpectrumBinaryData
(
pwiz::analysis
)
IdentDataFile::WriteConfig
(
pwiz::identdata
)
DefaultArrayLengthSorter
MagnitudeLorentzian
(
pwiz::frequency
)
ProteinAmbiguityGroup
(
pwiz::identdata
)
SpectrumDataFilter
(
pwiz::analysis
)
WriteCVParam
DefaultReaderList
(
pwiz::msdata
)
MascotReader
(
pwiz::identdata
)
ProteinDetection
(
pwiz::identdata
)
SpectrumIdentification
(
pwiz::identdata
)
x
DefaultReaderList
(
pwiz::proteome
)
MassAbundance
(
pwiz::chemistry
)
ProteinDetectionHypothesis
(
pwiz::identdata
)
SpectrumIdentificationItem
(
pwiz::identdata
)
DefaultReaderList
(
pwiz::tradata
)
MassTable
(
pwiz::identdata
)
ProteinDetectionList
(
pwiz::identdata
)
SpectrumIdentificationList
(
pwiz::identdata
)
XMLWriter
(
pwiz::minimxml
)
DefaultReaderList
(
pwiz::identdata
)
Match
(
pwiz::data::pepxml
)
ProteinDetectionProtocol
(
pwiz::identdata
)
SpectrumIdentificationProtocol
(
pwiz::identdata
)
z
DefaultTabHandler
(
pwiz::util
)
MatchData
(
pwiz::data::pepxml
)
ProteinList
(
pwiz::proteome
)
SpectrumIdentificationResult
(
pwiz::identdata
)
DelimReader
(
pwiz::identdata
)
MatrixIO
(
pwiz::analysis
)
ProteinList_DecoyGenerator
(
pwiz::analysis
)
SpectrumIdentity
(
pwiz::msdata
)
ZeroSampleFiller
(
pwiz::analysis
)
DelimWriter
(
pwiz::identdata
)
MatrixIOTest
ProteinList_DecoyGeneratorPredicate_Reversed
(
pwiz::analysis
)
SpectrumIdentityFromMzXML
(
pwiz::msdata
)
PrecursorMaskCodec::DemuxBoundary
(
pwiz::analysis
)
meanfunctor
(
ralab::base::resample::utilities
)
ProteinList_DecoyGeneratorPredicate_Shuffled
(
pwiz::analysis
)
SpectrumIdentityFromXML
(
pwiz::msdata
)
DemuxDebugReader
(
pwiz::analysis
)
Measure
(
pwiz::identdata
)
ProteinList_Filter
(
pwiz::analysis
)
SpectrumInfo
(
pwiz::msdata
)
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