Salmon
0.7.2
  • Requirements
  • Installation
  • Salmon
  • Salmon Output File Formats
  • Fragment Library Types
Salmon
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  • Welcome to Salmon’s documentation!
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Welcome to Salmon’s documentation!¶

Contents:

  • Requirements
    • Binary Releases
    • Requirements for Building from Source
  • Installation
  • Salmon
    • Using Salmon
    • Quasi-mapping-based mode (including lightweight alignment)
    • Alignment-based mode
    • Description of important options
    • What’s this LIBTYPE?
    • Output
    • Misc
    • References
  • Salmon Output File Formats
    • Quantification File
    • Command Information File
    • Auxiliary File
  • Fragment Library Types

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2016, Rob Patro, Geet Duggal, Mike Love, Rafael Irizarry and Carl Kingsford.

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